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notes on setting R up in Jupyter

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Paul Trowbridge 2020-05-21 22:34:49 -04:00
parent 0904405a46
commit 1e2c166ed8
2 changed files with 12 additions and 4 deletions
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10
jupyter/r.md
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@ -1,3 +1,11 @@
installation
---------------------------------------
* to install R on ubuntu can to [r download page](https://cran.r-project.org/)
* there are instruction on what to add to sources.list.
* After doing apt-get update, will probably need to add the public key which is addressed [here](https://askubuntu.com/questions/13065/how-do-i-fix-the-gpg-error-no-pubkey#15272)
* then do `sudo apt-get install r-base`
using grid.arrange using grid.arrange
https://cran.r-project.org/web/packages/gridExtra/vignettes/arrangeGrob.html https://cran.r-project.org/web/packages/gridExtra/vignettes/arrangeGrob.html
@ -31,4 +39,4 @@ for (i in dim1) {
print(j); print(j);
} }
} }
``` ```

6
jupyter/setup.md
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install R kernel for jupyter to use install R kernel for jupyter to use
* `sudo R` * `sudo R`
* `install.packages('IRkernel')` * `install.packages('IRkernel')` (most likely have to run R under sudo)
* `IRkernel::installspec()` * `IRkernel::installspec()` (don't use sudo R)
run on network: run on network:
`jupyter notebook --ip 10.0.10.15 --port 8888` `jupyter notebook --ip 10.0.10.15 --port 8888`
@ -11,4 +11,4 @@ run on network:
basic packages: basic packages:
* ggplot2, plyr, ggExtra, scales * ggplot2, plyr, ggExtra, scales
issues with connectin to kernel, atempting update of all packages `update.packages(ask = FALSE)` issues with connectin to kernel, atempting update of all packages `update.packages(ask = FALSE)`